advanced normalization tools (ants) software package Search Results


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Chem Impex International carboxyphenol ba
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advanced normalization tools software package  (Avantes Inc)
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Avantes Inc advanced normalization tools software package
Advanced Normalization Tools Software Package, supplied by Avantes Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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immunoprecipitation  (Santa Cruz Biotechnology)
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Santa Cruz Biotechnology immunoprecipitation
Immunoprecipitation, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mab against gfp (jl-8  (Becton Dickinson)
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Becton Dickinson mab against gfp (jl-8
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advanced normalization tools (ants) software package  (MathWorks Inc)
90
MathWorks Inc advanced normalization tools (ants) software package
Advanced Normalization Tools (Ants) Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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advanced normalization tools (ants)  (SourceForge net)
90
SourceForge net advanced normalization tools (ants)
Advanced Normalization Tools (Ants), supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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anti kshv lana  (Santa Cruz Biotechnology)
94
Santa Cruz Biotechnology anti kshv lana
KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
Anti Kshv Lana, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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advanced normalization tools (ants)  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare advanced normalization tools (ants)
KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
Advanced Normalization Tools (Ants), supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mab against gfp  (Becton Dickinson)
90
Becton Dickinson mab against gfp
KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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anti pten  (Cell Signaling Technology Inc)
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Cell Signaling Technology Inc anti pten
KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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anti-dopamine-β-hydroxylase conjugated with saporin toxin dβh-sap  (ATS Bio)
90
ATS Bio anti-dopamine-β-hydroxylase conjugated with saporin toxin dβh-sap
KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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Image Search Results


KDM5A/B associate with KSHV LANA and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).

Journal: bioRxiv

Article Title: Inhibition of KDM5A/B promotes antitumor innate immune responses in HHV-8/KSHV-positive B-cell lymphomas

doi: 10.64898/2026.01.28.702275

Figure Lengend Snippet: KDM5A/B associate with KSHV LANA and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).

Article Snippet: The following antibodies were used in this study: anti-KDM5A (Active Motif, Cat# 91211); anti-KDM5B (Bethyl Laboratories, Cat# A301-813A); ant-KDM5C (Bethyl Laboratories, Cat# A301-034A); anti-KSHV K8.1 (Santa Cruz Biotechnology, Cat# sc-65446); anti-EBV EBNA1 (Santa Cruz Biotechnology, Cat# sc-81581); anti-GAPDH (Santa Cruz Biotechnology, Cat# sc-47724); normal rat IgG (Santa Cruz Biotechnology, Cat# sc-2026); anti-KSHV LANA (Advanced Biotechnologies, Cat# 13-210-100); anti-FLAG M2 (Sigma-Aldrich, Cat# F1804); anti-CD3-FITC (Miltenyi Biotec, Cat# 130-113-690); anti-CD19-PE (Santa Cruz Biotechnology, Cat# 130-113-731); anti-CD20 (BioLegend, Cat# 382802); anti-mouse HRP-linked (Cell Signaling Technology, Cat#7076S) and anti-rabbit HRP-linked (Santa Cruz Biotechnology, Cat# 7074S) antibodies; isotype control IgG including rabbit IgG (Santa Cruz Biotechnology, Cat# 3900S), mouse IgG 1 (Santa Cruz Biotechnology, Cat# 5415S), mouse IgG 2a (Santa Cruz Biotechnology, Cat# 61656S) and mouse IgG 2b (Santa Cruz Biotechnology, Cat# 53484S).

Techniques: ChIP-sequencing, Generated, Western Blot, Immunofluorescence, Confocal Microscopy, Imaging, Transfection, Chromatin Immunoprecipitation, Control, Binding Assay